Replication_state: binarizes data into replicated or not replicated bins

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

binarizes data into replicated or not replicated bins

Description

binarizes data into replicated or not replicated bins

Usage

Replication_state(Samples, background, Chr_filter = NULL, cores = 3)

Arguments

Samples,	a dataframe containing scCN info with the following columns:chr, start, end, group, basename, CN, index
background,	a dataframe containing the median scCN info of the G1/G2 population with the following columns:chr, start, end, group, basename, background
Chr_filter,	filters chromosomes to keep in the analysis
cores,	number of threads to use while to parallelise

Value

tibble

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.