Files in CeMOS-Mannheim/MALDIcellassay
Automated MALDI Cell Assays Using Dose-Response Curve Fitting
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/rhub.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MALDIcellassay.Rproj
NAMESPACE
NEWS.md
R/MALDIassay_Class.R
R/aggregateSpectra.R
R/calculateChauvenetCriterion.R
R/calculateCurveFit.R
R/calculatePeakstatistics.R
R/checkRecalibration.R
R/detectPeaks.R
R/example_data.R
R/extractIntensity.R
R/extractSpots.R
R/filterVariance.R
R/fitCurve.R
R/getEstimates.R
R/getMzShift.R
R/getNormFactors.R
R/getters.R
R/helpers.R
R/loadSpectra.R
R/normalize.R
R/normalizeByFactor.R
R/plotCurves.R
R/plotPeak.R
R/preprocess.R
R/qualitiyMetrics.R
R/repairMetaData.R
R/shiftMassAxis.R
README.md
_pkgdown.yml
cran-comments.md
data-raw/Blank2022intmat.R
data-raw/Blank2022peaks.R
data-raw/Blank2022res.R
data-raw/Koch2024mzML.R
data-raw/settings_mzML_data.csv
data-raw/sticker.R
data/Blank2022intmat.rda
data/Blank2022peaks.rda
data/Blank2022res.rda
data/Blank2022spec.rda
inst/CITATION
inst/extdata/Koch2024mzML/0.0001.mzML
inst/extdata/example-raw-spectra.zip
man/Blank2022intmat.Rd
man/Blank2022peaks.Rd
man/Blank2022res.Rd
man/Blank2022spec.Rd
man/MALDIassay-class.Rd
man/calculateChauvenetCriterion.Rd
man/calculateCurveFit.Rd
man/calculateSSMD.Rd
man/calculateVPrime.Rd
man/calculateZPrime.Rd
man/checkRecalibration.Rd
man/extractIntensity.Rd
man/extractSpots.Rd
man/figures/MALDIcellassay_sticker.png
man/figures/logo.png
man/filterVariance.Rd
man/fitCurve.Rd
man/getAllMz.Rd
man/getAppliedMzShift.Rd
man/getAppliedNormFactors.Rd
man/getAvgPeaks.Rd
man/getAvgSpectra.Rd
man/getBinTol.Rd
man/getConc.Rd
man/getCurveFits.Rd
man/getFittingParameters.Rd
man/getIntensityMatrix.Rd
man/getMzFromMzIdx.Rd
man/getMzShift.Rd
man/getNormFactors.Rd
man/getNormMethod.Rd
man/getNormMz.Rd
man/getNormMzTol.Rd
man/getPeakStatistics.Rd
man/getRecalibrationError.Rd
man/getSNR.Rd
man/getSinglePeaks.Rd
man/getSingleSpecIntensity.Rd
man/getSpots.Rd
man/getVarFilterMethod.Rd
man/isMALDIassay.Rd
man/loadSpectra.Rd
man/loadSpectraMzML.Rd
man/normalize.Rd
man/normalizeByFactor.Rd
man/plotCurves.Rd
man/plotPeak.Rd
man/shiftMassAxis.Rd
man/transformConc2Log.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-.aggregateSpectra.R
tests/testthat/test-.preprocess.R
tests/testthat/test-MALDIassay_Class.R
tests/testthat/test-calculateChauvenetCriterion.R
tests/testthat/test-checkRecalibration.R
tests/testthat/test-detectPeaks.R
tests/testthat/test-extractSpots.R
tests/testthat/test-filterVariance.R
tests/testthat/test-fitCurve.R
tests/testthat/test-getAllMz.R
tests/testthat/test-getDirectory.R
tests/testthat/test-getMzShift.R
tests/testthat/test-getNormFactors.R
tests/testthat/test-getRecalibrationError.R
tests/testthat/test-getSNR.R
tests/testthat/test-getSingleSpecIntensity.R
tests/testthat/test-getVarFilterMethod.R
tests/testthat/test-loadSpectra.R
tests/testthat/test-normalize.R
tests/testthat/test-normalizeByFactor.R
tests/testthat/test-plotCurve.R
tests/testthat/test-plotPeak.R
tests/testthat/test-repairMetaData.R
tests/testthat/test-shiftMassAxis.R
vignettes/.gitignore
vignettes/Example.Rmd
