API for CharlesJB/rnaseq
Wrapper Functions for RNA-Seq Post-Processing
| Global functions | |
|---|---|
| ERCC92 | Man page |
| arrange_anno | Source code |
| batch_de | Man page Source code |
| batch_pca | Man page Source code |
| batch_volcano | Man page Source code |
| complete_and_validate_tables | Source code |
| complete_de_infos | Source code |
| complete_pca_infos | Source code |
| complete_report_infos | Source code |
| complete_volcano_infos | Source code |
| create_dummy_txi | Man page Source code |
| deseq2_analysis | Man page Source code |
| filter_txi | Man page Source code |
| format_counts | Man page Source code |
| format_de_odysse | Man page Source code |
| format_de_results | Man page Source code |
| get_anno | Source code |
| get_anno_df | Man page Source code |
| get_demo_abundance_files | Man page Source code |
| get_demo_anno_file | Man page Source code |
| get_demo_de_infos_file | Man page Source code |
| get_demo_design | Man page Source code |
| get_demo_kallisto_dir | Man page Source code |
| get_demo_metadata_file | Man page Source code |
| get_demo_pca_infos_file | Man page Source code |
| get_demo_txi | Man page Source code |
| get_demo_volcano_infos_file | Man page Source code |
| get_filenames | Man page Source code |
| get_fpkm | Source code |
| get_human_hsk | Man page Source code |
| get_raw_count_anno_df | Man page Source code |
| get_ruvg_anno_df | Man page Source code |
| get_tpm_anno_df | Man page Source code |
| import_kallisto | Man page Source code |
| is_color | Source code |
| merge_pca_lists | Source code |
| parse_metadata_for_LO_report | Man page Source code |
| plot_pca | Man page Source code |
| print_verbose | Source code |
| produce_RUVSeq_graphs | Man page Source code |
| produce_deliverables | Man page Source code |
| produce_odysse_format | Man page Source code |
| produce_pca | Man page Source code |
| produce_pca_df | Man page Source code |
| produce_report | Man page Source code |
| produce_single_de_batch | Source code |
| produce_single_pca_batch | Source code |
| produce_single_pca_df | Source code |
| produce_single_volcano_batch | Source code |
| produce_txi | Source code |
| produce_volcano | Man page Source code |
| round_values | Source code |
| ruvg_normalization | Man page Source code |
| splicing_analysis | Source code |
| split_de_results | Man page Source code |
| summarize_to_gene | Source code |
| validate_anno | Source code |
| validate_de | Source code |
| validate_de_infos | Source code |
| validate_metadata | Source code |
| validate_pca_infos | Source code |
| validate_txi | Man page Source code |
| validate_volcano_infos | Source code |
| wrapper_report_LO | Man page Source code |
