API for CharlesJB/rnaseq
Wrapper Functions for RNA-Seq Post-Processing

Global functions
ERCC92 Man page
arrange_anno Source code
batch_de Man page Source code
batch_pca Man page Source code
batch_volcano Man page Source code
complete_and_validate_tables Source code
complete_de_infos Source code
complete_pca_infos Source code
complete_report_infos Source code
complete_volcano_infos Source code
create_dummy_txi Man page Source code
deseq2_analysis Man page Source code
filter_txi Man page Source code
format_counts Man page Source code
format_de_odysse Man page Source code
format_de_results Man page Source code
get_anno Source code
get_anno_df Man page Source code
get_demo_abundance_files Man page Source code
get_demo_anno_file Man page Source code
get_demo_de_infos_file Man page Source code
get_demo_design Man page Source code
get_demo_kallisto_dir Man page Source code
get_demo_metadata_file Man page Source code
get_demo_pca_infos_file Man page Source code
get_demo_txi Man page Source code
get_demo_volcano_infos_file Man page Source code
get_filenames Man page Source code
get_fpkm Source code
get_human_hsk Man page Source code
get_raw_count_anno_df Man page Source code
get_ruvg_anno_df Man page Source code
get_tpm_anno_df Man page Source code
import_kallisto Man page Source code
is_color Source code
merge_pca_lists Source code
parse_metadata_for_LO_report Man page Source code
plot_pca Man page Source code
print_verbose Source code
produce_RUVSeq_graphs Man page Source code
produce_deliverables Man page Source code
produce_odysse_format Man page Source code
produce_pca Man page Source code
produce_pca_df Man page Source code
produce_report Man page Source code
produce_single_de_batch Source code
produce_single_pca_batch Source code
produce_single_pca_df Source code
produce_single_volcano_batch Source code
produce_txi Source code
produce_volcano Man page Source code
round_values Source code
ruvg_normalization Man page Source code
splicing_analysis Source code
split_de_results Man page Source code
summarize_to_gene Source code
validate_anno Source code
validate_de Source code
validate_de_infos Source code
validate_metadata Source code
validate_pca_infos Source code
validate_txi Man page Source code
validate_volcano_infos Source code
wrapper_report_LO Man page Source code
CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.