parse_metadata_for_LO_report: Parse metadata LO

In CharlesJB/rnaseq: Wrapper Functions for RNA-Seq Post-Processing

Parse metadata LO

Description

Parse metadata and generate a draft for pca_info, volcano_info, report_info files.

Usage

parse_metadata_for_LO_report(
  metadata,
  pca_subset = "Cell",
  pca_batch_metadata = c("Cell", "Compound"),
  extra_count_matrix = NULL,
  report_title = "title"
)

Arguments

metadata	(dataframe)
pca_subset	(character) column of metadata, filter for automated PCA (ex.: Cell type)
pca_batch_metadata	(character) extra columns for pca coloring (biological or batch effects)
extra_count_matrix	(character)
report_title	(character)

Value

a list of data.frame

CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.