produce_RUVSeq_graphs: Produce RUVSeq recommended graph to evaluate normalization

In CharlesJB/rnaseq: Wrapper Functions for RNA-Seq Post-Processing

Produce RUVSeq recommended graph to evaluate normalization

Description

Produce RUVSeq recommended graph to evaluate normalization

Usage

produce_RUVSeq_graphs(txi, output = "RUVg_graphs.pdf")

Arguments

txi	The txi object returned by the ruvg_normalization function.
output	The name of the pdf that will be produced. Default: RUVg_graphs.pdf

Value

Silently return the txi object used as input.

Examples

txi <- get_demo_txi()
# For this demo, we use a subset of housekeeping genes. In a real example,
# It is recommended to use the default value or a complete set of
# housekeeping genes.
txi_ruv <- ruvg_normalization(txi, housekeeping_genes = c("RPL9", "RPL24"))
## Not run: 
   produce_RUVSeq_graphs(txi_ruv)

## End(Not run)

CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.