ruvg_normalization: Normalize data with RUVSeq RUVg algorithm
In CharlesJB/rnaseq: Wrapper Functions for RNA-Seq Post-Processing

ruvg_normalization

R Documentation

Normalize data with RUVSeq RUVg algorithm

Description

Normalize data with RUVSeq RUVg algorithm

Usage

ruvg_normalization(
  txi,
  housekeeping_genes = get_human_hsk(),
  ignoreTxVersion = FALSE,
  txOut = FALSE
)

Arguments

`txi`	The `txi` object returned by the `import_kallisto` function.
`housekeeping_genes`	A `vector` of gene symbols
`ignoreTxVersion`	Ignore version of tx. Default = FALSE
`txOut`	txi was produced at tx level?. Default = FALSE

Value

The original txi object with a $ruvg_counts element added.

Examples

txi <- get_demo_txi()
# For this demo, we use a subset of housekeeping genes. In a real example,
# It is recommended to use the default value or a complete set of
# housekeeping genes.
txi_ruv <- ruvg_normalization(txi, housekeeping_genes = c("RPL9", "RPL24"))

CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.