get_filenames: Parse kallisto quant directory to retrieve filenames

In CharlesJB/rnaseq: Wrapper Functions for RNA-Seq Post-Processing

Parse kallisto quant directory to retrieve filenames

Description

Parse kallisto quant directory to retrieve filenames

Usage

get_filenames(dir_kallisto, file_extension = "h5")

Arguments

dir_kallisto	Kallisto quantification base directory
file_extension	The extension to parse (h5 or tsv). Default: h5

Value

A named list of the abundance files.

Examples

dir_kallisto <- get_demo_kallisto_dir()
filenames <- get_filenames(dir_kallisto, file_extension = "tsv")

CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.