format_counts: Prepare formated table counts in odysse format.

In CharlesJB/rnaseq: Wrapper Functions for RNA-Seq Post-Processing

Prepare formated table counts in odysse format.

Description

The table contains annotation and the counts (raw_counts/tpm/fpkm).

Usage

format_counts(txi, digits = 4, use_ruv = FALSE)

Arguments

txi	The txi object returned by the import_kallisto function.
digits	Integer indicating the number of decimal places
use_ruv	Use RUVg normalization? Needs to be pre-computed using the ruvg_normalization function. Default: FALSE.

Value

A data.frame with the anno and the merged counts values.

Examples

txi <- get_demo_txi()
counts <- format_counts(txi)

CharlesJB/rnaseq documentation built on Oct. 17, 2023, 5:37 p.m.