Files in Coayala/MetaboTandem

Analysis and Visualization of LC-MS/MS Data

CODE_OF_CONDUCT.md LICENSE.md NEWS.md R/app_config.R R/app_server.R R/app_ui.R R/class_MetaboTandem.R R/fct_alignment.R R/fct_annotation.R R/fct_autotuner.R R/fct_correspondence.R R/fct_data_filter.R R/fct_external.R R/fct_extract.R R/fct_gap_filling.R R/fct_home_ui.R R/fct_load_data.R R/fct_metaclean.R R/fct_normalization.R R/fct_peak_picking.R R/fct_stats_multi.R R/fct_stats_univ.R R/fct_ui_helpers.R R/golem_utils_server.R R/golem_utils_ui.R R/mod_alignment.R R/mod_annotation.R R/mod_load_data.R R/mod_load_data_sub_metadata.R R/mod_load_data_sub_spectra.R R/mod_main_pipeline.R R/mod_peak_picking.R R/mod_postprocessing.R R/mod_stats_multi.R R/mod_stats_setup.R R/mod_stats_univ.R R/run_app.R R/utils-pipe.R README.Rmd README.md dev/01_start.R dev/02_dev.R dev/03_deploy.R dev/run_dev.R inst/paper_final.Rmd inst/pipeline_paper.Rmd inst/test_pipeline.Rmd man/add_canopus.Rd man/alignment.Rd man/apply_gap_filling.Rd man/apply_peak_refinement.Rd man/calculate_clustering.Rd man/calculate_permanova.Rd man/centroid_check.Rd man/check_model.Rd man/correspondence.Rd man/data_filtering.Rd man/differential_analysis.Rd man/extract_abundance_table.Rd man/extract_autotuner.Rd man/extract_feature_chromatograms.Rd man/extract_feature_definitions.Rd man/extract_feature_spectra.Rd man/fit_models.Rd man/get_annotation_tables.Rd man/get_molecular_class.Rd man/load_dataframe.Rd man/load_metadata.Rd man/load_spectra_data.Rd man/merge_annotation_tables.Rd man/normalization.Rd man/ordination_methods.Rd man/ordination_plot.Rd man/peak_picking.Rd man/pipe.Rd man/plot_da_sig_features.Rd man/plot_mirror.Rd man/plot_model_sig_features.Rd man/plot_volcano.Rd man/run_app.Rd man/start_autotuner.Rd man/test_contrasts.Rd man/test_peak_picking.Rd tests/spelling.R tests/testthat.R tests/testthat/test-golem-recommended.R tests/testthat/test-golem_utils_server.R tests/testthat/test-golem_utils_ui.R tests/testthat/test-mod_alignment.R tests/testthat/test-mod_annotation.R tests/testthat/test-mod_gap_filling.R tests/testthat/test-mod_load_data.R tests/testthat/test-mod_load_data_metadata.R tests/testthat/test-mod_load_data_spectra.R tests/testthat/test-mod_load_data_sub_metadata.R tests/testthat/test-mod_load_data_sub_spectra.R tests/testthat/test-mod_main_pipeline.R tests/testthat/test-mod_peak_picking.R tests/testthat/test-mod_solo_annotation.R tests/testthat/test-mod_stats_multi.R tests/testthat/test-mod_stats_setup.R tests/testthat/test-mod_stats_univ.R vignettes/example.Rmd