repair.soma3d: Repair single soma from data

In ComputationalIntelligenceGroup/3DSomaMS: 3DSomaMS: A univocal definition of the neuronal soma morphology using Gaussian mixture models

Description

Repair the surface of the soma to remove holes and vertices inside the mesh

Usage

repair.soma3d(soma, ao.path = tempdir(), broken.path = tempdir(),
  repaired.path = tempdir(), name = "soma", returnSoma = F)

Arguments

soma	A filepath or the structure returned by read_VRML or read_PLY representing damaged soma mesh
ao.path	folder where intermediate files with ambient occlusion data are saved
broken.path	Folder where intermediate files with broken somas after GMM threshold are saved
repaired.path	Folder where final file is stored
name	Name of the final file
returnSoma

Value

Repaired soma (if returnSoma is True)

See Also

read_VRML

ComputationalIntelligenceGroup/3DSomaMS documentation built on May 6, 2019, 12:49 p.m.