segment_somas: Segment somas

In ComputationalIntelligenceGroup/3DSomaMS: 3DSomaMS: A univocal definition of the neuronal soma morphology using Gaussian mixture models

Description

Apply Gaussian mixture models to segment soma from dendrites

Usage

segment_somas(directory, output_shape_diameter, broken_mesh,
  output_poisson_reconstruction, final_result)

Arguments

directory	path to the folder where PLY files of the somas are saved
output_shape_diameter	path to the folder where somas with shape diameter will be saved
broken_mesh	path to the folder where somas will be saved after that the GMM threshold removes the dendrites
output_poisson_reconstruction	path to the folder where somas will be saved after the mesh closing process
final_result	path to the folder where final segmented somas will be saved after the isolated pieces are removed

Value

None

Examples

segment_somas(directory = file.path(tempdir(), "poisson_reconstruction_ao"), output_shape_diameter = file.path(tempdir(), "sdf"), broken_mesh = file.path(tempdir(), "broken_mesh_sdf"), output_poisson_reconstruction = file.path(tempdir(), "poisson_reconstruction_sdf"), final_result = file.path(tempdir(), "final_result"))

ComputationalIntelligenceGroup/3DSomaMS documentation built on May 6, 2019, 12:49 p.m.