segment.soma3d: Extract single soma from data

In ComputationalIntelligenceGroup/3DSomaMS: 3DSomaMS: A univocal definition of the neuronal soma morphology using Gaussian mixture models

Description

Apply Gaussian mixture models to segment soma from dendrites

Usage

segment.soma3d(soma, sdf.path = tempdir(), broken_sdf.path = tempdir(),
  reconstruction.path = tempdir(), name = "soma")

Arguments

soma	A filepath or the structure returned by read_VRML or read_PLY representing damaged soma mesh
sdf.path	folder where intermediate files with shape diameter function data are saved
broken_sdf.path	Folder where intermediate files with broken somas after GMM threshold are saved
reconstruction.path	Folder where reconstructed file is stored
name	Name of the soma file

Value

Extracted soma

See Also

read_VRML

ComputationalIntelligenceGroup/3DSomaMS documentation built on May 6, 2019, 12:49 p.m.