repair_soma: Repair soma morphology

In ComputationalIntelligenceGroup/3DSomaMS: 3DSomaMS: A univocal definition of the neuronal soma morphology using Gaussian mixture models

Description

Repair the surface of the neuron to remove holes and vertices inside the mesh

Usage

repair_soma(directory, output_ambient_occlusion, broken_mesh,
  output_poisson_reconstruction)

Arguments

directory	path to the folder where PLY files representing damaged soma mesh
output_ambient_occlusion	path to the folder where somas with ambient occlusion are saved
broken_mesh	path to the folder where somas were saved after the GMM threshold was imposed and vertices inside the soma or forming cavities were removed
output_poisson_reconstruction	path to the folder where somas were saved after the mesh closing process

Value

None

Examples

repair_soma(directory = file.path(tempdir(),"PLYs"), output_ambient_occlusion = file.path(tempdir(),"ambient_occlusion"), broken_mesh = file.path(tempdir(),"broken_mesh_ao"), output_poisson_reconstruction = file.path(tempdir(),"poisson_reconstruction_ao"))

ComputationalIntelligenceGroup/3DSomaMS documentation built on May 6, 2019, 12:49 p.m.