soma_caracterization: Characterize soma with ray tracing reeb graph

In ComputationalIntelligenceGroup/3DSomaMS: 3DSomaMS: A univocal definition of the neuronal soma morphology using Gaussian mixture models

Description

Compute the morphological characterization of the soma. First, cast rays from the centroid of the soma to the surface, defining level curves. Next, orientate soma and adjust curves. Finally compute parameters according to the curves.

Usage

soma_caracterization(path_somas_repaired, path_csv_file)

Arguments

path_somas_repaired	path to the folder where segmented somas were placed. They have to be PLY files.
path_csv_file	path to a csv file where the values of the characterization will be saved

Value

None

Examples

soma_caracterization(path_somas_repaired = file.path(tempdir(),"reconstructed"), path_csv_file = file.path(tempdir(),"somaReebParameters.csv"))

ComputationalIntelligenceGroup/3DSomaMS documentation built on May 6, 2019, 12:49 p.m.