API for Cronjaeger/HotBirdHMM
Find Recombination Hoitspots using a Hidden Markov Model

Global functions
ARGRateM Source code
FastTransMat Source code
TransMat Source code
compute_ML_rho Man page Source code
compute_Px Man page Source code
compute_Z Source code
compute_equidistant_breaks Source code
compute_marginal_recomb_state Source code
compute_mu Man page Source code
compute_windowed_ML_rho Source code
count_changepoints Man page Source code
count_runs Man page Source code
d_seq Man page Source code
find_start_of_runs Source code
forwad_backward_logspace Source code
forward_algorithm Man page Source code
forward_algorithm_logspace Man page Source code
gamete_test Source code
is_informative_char Source code
likelihood_Y Man page Source code
locate_hotspots Source code
log_likelihood_XY Man page Source code
log_likelihood_Y Man page Source code
log_probs_2_normalised_probs Source code
log_sum_exp Man page Source code
log_sum_exp_lower_bound Man page Source code
log_sum_exp_upper_bound Man page Source code
ms_out2SeqArray Source code
probMutationOccurs Source code
sample_X Man page Source code
sample_X_with_hotspots Source code
sample_XandY Man page Source code
sample_XandY_with_hotspots Source code
sample_YgivenX Man page Source code
theta_watterson Man page Source code
Cronjaeger/HotBirdHMM documentation built on Nov. 8, 2017, 12:09 a.m.