sample_XandY: Sample full model
In Cronjaeger/HotBirdHMM: Find Recombination Hoitspots using a Hidden Markov Model
Description
Usage
Arguments
Value
Description
Samples both hidden states and emissions
Usage
1
sample_XandY(rho, theta, M, L, sample_x0 = NULL)
Arguments
rho,
rathe of recombination between ajacent sites; affects transition
rate of hidden states.
theta
Rate of mutation; affects distribution of Y|X.
M
number of hidden states of X.
L
desired length of sampled sequences.
sample_x0
a function which generates samples the initial state of the
hidden variables X.
Value
a list with names “X” and “Y”
X is a vector of length L encoding the hidden states
Y is a vector of length L encoding the emissions.
Cronjaeger/HotBirdHMM documentation built on May 9, 2019, 6:01 p.m.
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Description Usage Arguments Value
Description
Samples both hidden states and emissions
Usage
1 | sample_XandY(rho, theta, M, L, sample_x0 = NULL)
|
Arguments
rho, |
rathe of recombination between ajacent sites; affects transition rate of hidden states. |
theta |
Rate of mutation; affects distribution of Y|X. |
M |
number of hidden states of X. |
L |
desired length of sampled sequences. |
sample_x0 |
a function which generates samples the initial state of the hidden variables X. |
Value
a list with names “X” and “Y”
X is a vector of length L encoding the hidden states
Y is a vector of length L encoding the emissions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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