Find Recombination Hoitspots using a Hidden Markov Model

DESCRIPTION

LICENSE

NAMESPACE

R/HMM.R
R/HMM_Z.R
R/HotSpotScanner.R
R/TransMat.R
README.md
man/compute_ML_rho.Rd
man/compute_Px.Rd
man/compute_mu.Rd
man/count_changepoints.Rd
man/count_runs.Rd
man/d_seq.Rd
man/forward_algorithm.Rd
man/forward_algorithm_logspace.Rd
man/likelihood_Y.Rd
man/log_likelihood_XY.Rd
man/log_likelihood_Y.Rd
man/log_sum_exp.Rd
man/log_sum_exp_lower_bound.Rd
man/log_sum_exp_upper_bound.Rd
man/sample_X.Rd
man/sample_XandY.Rd
man/sample_YgivenX.Rd
man/theta_watterson.Rd
notebooks/test1_simulation_and_likelihoods.Rmd
notebooks/test1_simulation_and_likelihoods.html

notebooks/test1_simulation_and_likelihoods.pdf
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