Man pages for Cronjaeger/HotBirdHMM
Find Recombination Hoitspots using a Hidden Markov Model

compute_ML_rhoMaximum likelihood of recombination rate
compute_muCompute emission probabilities for HMM
compute_PxCompute hidden state transition kernel
count_changepointsCount changepoints
count_runsCount runs
d_seqGenerate discretization timepoints
forward_algorithmForward algorithm
forward_algorithm_logspaceForward algorithm in logspace
likelihood_YMarginal likelihood of Y
log_likelihood_XYJoint likelihood of (X,Y)
log_likelihood_YMarginal log-likelihood of Y
log_sum_expCompute log-sum-exp
log_sum_exp_lower_boundApproximate log-sum-exp from below
log_sum_exp_upper_boundApproximate log-sum-exp from above
sample_XSample hidden states
sample_XandYSample full model
sample_YgivenXSample emissions
theta_wattersonWatterson's estimator
Cronjaeger/HotBirdHMM documentation built on Feb. 13, 2018, 6:48 a.m.