sample_YgivenX: Sample emissions
In Cronjaeger/HotBirdHMM: Find Recombination Hoitspots using a Hidden Markov Model
Description
Usage
Arguments
Value
Description
Samples a sequence of binary emissions (Y[i] = 1 is interpreted as,
“Heterozygous sites at position i”; whereas Y[i] = 0 is interpreted as
signifying homozugosity.)
Usage
1
sample_YgivenX(X, theta, M)
Arguments
X
a vector of integers encoding the states of the hidden variables
theta
the rate of mutation between two sequences
M
the number of states of the hidden variables X
Value
A vector of the same length as X s.t. Y[i] = 1 with
probability mu[X[i]].
Cronjaeger/HotBirdHMM documentation built on May 9, 2019, 6:01 p.m.
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Description Usage Arguments Value
Description
Samples a sequence of binary emissions (Y[i] = 1 is interpreted as, “Heterozygous sites at position i”; whereas Y[i] = 0 is interpreted as signifying homozugosity.)
Usage
1 | sample_YgivenX(X, theta, M)
|
Arguments
X |
a vector of integers encoding the states of the hidden variables |
theta |
the rate of mutation between two sequences |
M |
the number of states of the hidden variables X |
Value
A vector of the same length as X s.t. Y[i] = 1 with
probability mu[X[i]].
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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