compute_Px: Compute hidden state transition kernel
In Cronjaeger/HotBirdHMM: Find Recombination Hoitspots using a Hidden Markov Model
Description
Usage
Arguments
Value
Description
A wrapper function for calling A. Hobolths code for computin the hiden state
rate matrix by way of matrix exponentiation (as outlined in his note).
Usage
1
compute_Px(M, rho)
Arguments
M
the number of hissden states
rho
The recombination rate between two sites
Value
An M-by-M matrix P, s.t. P[i,j] = P(X_t = j | X_t-1 = i)
Cronjaeger/HotBirdHMM documentation built on May 9, 2019, 6:01 p.m.
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Description Usage Arguments Value
Description
A wrapper function for calling A. Hobolths code for computin the hiden state rate matrix by way of matrix exponentiation (as outlined in his note).
Usage
1 | compute_Px(M, rho)
|
Arguments
M |
the number of hissden states |
rho |
The recombination rate between two sites |
Value
An M-by-M matrix P, s.t. P[i,j] = P(X_t = j | X_t-1 = i)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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