writeMSA: Write a multiple sequence alignment in a phylip like format....

Description Usage Arguments Examples

View source: R/report.R

Description

Write a multiple sequence alignment in a phylip like format. Formatted for easily accessing positions and differences

Usage

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writeMSA(aln, file = "", block.width = 50)

Arguments

aln

The alignment as a DNAStringSet.

file

The filename and path.

block.width

The block width of the resulting alignment.

Examples

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## Not run: 
library(Biostrings)
msa <- DNAStringSet(c("AAA", "AGA", ))
print("TODO: write rep seq example which runs")

## End(Not run)

DKMS-LSL/dr2s documentation built on March 14, 2021, 2:46 p.m.