Man pages for DanWiebe/fsgor
Package for Fold-specific GO Terms Recognition
| annot_data | List contains annotation data |
| bg_genes | Vector contains background set of genes from example rna-seq... |
| colnameslist | List contains column names for recognize_fs_terms function |
| convert_annotation_wide | Convert GAF format type annotation to list contains GO term... |
| create_annotation_with_ancestry | Annotation with ancestry creator |
| create_intervals_matrix | Create rectangle plot coordinates for each Go term |
| div_genes_to_quantiles | Gene set quantile separator |
| down_genes | Dataframe contains example data for div_genes_quantiles... |
| find_boundaries | DAG roots and leaves extractor |
| fold_spec_chart | fold specificity rectangle plot |
| fold_spec_chart_data | Data parser for fold-specificity rectangle plot |
| fold_spec_graph | Create igraph object for fold-specificity recognition... |
| fs_res_down | List contains dataframes with fold-specificty recognition... |
| fs_res_up | List contains dataframes with fold-specificty recognition... |
| func_annot_test_internal | Functional annotation test |
| get_term_ancestors | Extract all ancestors for distinct GO term |
| igraph_data_prep | Create igraph object for fold-specific terms |
| intersect_with_background | Intersect annotation with background set of genes |
| multiple_sets_annot | Functional annotation for multiple gene sets |
| par_multiple_sets_annot | Functional annotation for multiple gene sets. Parallel... |
| patterns_enum | List contains regex patterns for Gene identifiers |
| prepare_annotaion | Create annotation object from .obo and .gaf files |
| read_gaf | GAF file reader |
| read_obo | OBO file reader |
| recognize_fs_terms | Fold-specific GO terms recognition |
| six_perc_labs | Labels for fold_spec_chart with data separated into six... |
| up_annot | List contains functional annotations for all combinatons of... |
| up_genes | Dataframe contains example data for div_genes_quantiles... |
