read_obo: OBO file reader

Description Usage Arguments Value Examples

Description

Parses .obo format file (open biomedical ontologies), returns list contains GO term ontology relation data, GO terms real names, GO terms namespaces

Usage

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read_obo(obopath)

Arguments

obopath

path to the .obo format file

Value

lists that contain GO terms ancestry data, names for GO terms, and corresponding namespace for each GO term

Examples

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    go_path <- system.file("extdata", "goslim_plant.obo", package = "fsgor")
    read_obo(go_path)

DanWiebe/fsgor documentation built on May 12, 2019, 12:30 a.m.