convert_annotation_wide: Convert GAF format type annotation to list contains GO term...

In DanWiebe/fsgor: Package for Fold-specific GO Terms Recognition

Description

Convert GAF format type annotation to list contains GO term id's as keys and Gene ID's as values

Usage

convert_annotation_wide(data, id_pattern = NULL)

Arguments

data	- GAF annotation table (output of read.gaf function)
id_pattern	- regex for Gene identifier (see fsgor::patterns_enum$Arabidopsis_thaliana for Arabidopsis AGI code example pattern)

Value

- list with GO term id's as keys and Gene ID's as values

Examples

## Not run: 
    convert_annotation_wide(annot_data, fsgor::patterns_enum$Arabidopsis_thaliana)

## End(Not run)

DanWiebe/fsgor documentation built on May 12, 2019, 12:30 a.m.