convert_annotation_wide: Convert GAF format type annotation to list contains GO term...

Description Usage Arguments Value Examples

Description

Convert GAF format type annotation to list contains GO term id's as keys and Gene ID's as values

Usage

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Arguments

data

- GAF annotation table (output of read.gaf function)

id_pattern

- regex for Gene identifier (see fsgor::patterns_enum$Arabidopsis_thaliana for Arabidopsis AGI code example pattern)

Value

- list with GO term id's as keys and Gene ID's as values

Examples

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## Not run: 
    convert_annotation_wide(annot_data, fsgor::patterns_enum$Arabidopsis_thaliana)

## End(Not run)

DanWiebe/fsgor documentation built on May 12, 2019, 12:30 a.m.