fold_spec_graph: Create igraph object for fold-specificity recognition...

In DanWiebe/fsgor: Package for Fold-specific GO Terms Recognition

Description

Create igraph object for fold-specificity recognition function output (recognize_fs_terms())

Usage

fold_spec_graph(fs_res, annot_data, reg, scope = NULL)

Arguments

fs_res	- list contains fold-specificity recognition results
annot_data	- prepare_annotation() function output
reg	- regulation type for DEG taken in to analysis ("up" or "down")
scope	- GO term namespace ("biological_process", "cellular_component", "molecular_function"), NULL by default (GO terms from all namespaces will be plotted)

Value

- igraph object with sugiyama layout

Examples

     data(fs_res_up, annot_data, package = "fsgor")
     fold_spec_graph(fs_res_up, annot_data, "up", scope = "molecular_function")

DanWiebe/fsgor documentation built on May 12, 2019, 12:30 a.m.