func_annot_test_internal: Functional annotation test
In DanWiebe/fsgor: Package for Fold-specific GO Terms Recognition

Description Usage Arguments Value Examples

Conducts functional annotation using Fisher exact test

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func_annot_test_internal(annotlist, realnames, namespaces, inputgeneset,
  gene_amount_border = 1, fisher_alternative = "greater",
  p_adjust_method = "BH")

`annotlist`	- list contains terms as keys and direct annotations as values
`realnames`	- GO terms full names
`namespaces`	- GO terms namespaces
`inputgeneset`	- vector of query genes
`gene_amount_border`	- minimal number of genes annotated to a term (1 by default)
`fisher_alternative`	- fisher exact test alternative, possible values: "greater", "less", "two.sided" ("greater by default)
`p_adjust_method`	- method for multiple testing correction (to see all possible methods print: p.adjust.methods)

- dataframe contains functional annotaion for gene set

    # data - dataframe contains gene IDs in first column and fold-change values in second column
    data(up_genes, annot_data, package = "fsgor")
    gene_sets <- div_genes_to_quantiles(up_genes, 6)
    func_annot_test_internal(annot_data$annot_data, annot_data$real_names, annot_data$namespaces, gene_sets$'1')