tpp2dCalcFractAbundance: Calculate fractional abundance and DMSO ratio of successive...

Description Usage Arguments Value Examples

View source: R/tpp2dCalcFractAbundance.R

Description

Calculates fractional abundance and DMSO ratio of successive sumionareas and creates respective columns which are added two the data frame which is handed over

Usage

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tpp2dCalcFractAbundance(
  configTable = NULL,
  data,
  intensityStr = NULL,
  idVar = NULL
)

Arguments

configTable

DEPCRECATED

data

data frame of TPP-CCR results (e.g. obtained by run2DTPPCCR).

intensityStr

DEPCRECATED

idVar

DEPCRECATED

Value

Data frame that was handed over with additional columns of fractional abundance and DMSO1 vs DMSO2 ratio

Examples

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data(panobinostat_2DTPP_smallExample)

# Import data:
datIn <- tpp2dImport(configTable = panobinostat_2DTPP_config,
                      data = panobinostat_2DTPP_data,
                      idVar = "representative",
                      addCol = "clustername",
                      intensityStr = "sumionarea_protein_",
                      nonZeroCols = "qusm")

# View attributes of imported data (experiment infos and import arguments):
attr(datIn, "importSettings") %>% unlist
attr(datIn, "configTable")

# Compute fractional abundance:
datDMSORatio <- tpp2dCalcFractAbundance(data = datIn)
colnames(datDMSORatio)

DoroChilds/TPP documentation built on Oct. 31, 2021, 4:38 a.m.