tpp2dPlotQChist: Plot quality control histograms

Description Usage Arguments Value

View source: R/tpp2dPlotQChist.R

Description

Plots quality control histograms of pEC50 values of reference dataset and indicates the pEC50 values of the 2D-TPP experiment

Usage

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tpp2dPlotQChist(
  configFile = NULL,
  resultTable = NULL,
  resultPath = NULL,
  trRef = NULL,
  fcStr = "rel_fc_",
  idVar = "gene_name",
  qualColName = "qupm"
)

Arguments

configFile

data frame or system path to table that specifies important details of the 2D-TPP experiment

resultTable

data.frame containing the results of a CCR analysis of 2D-TPP data

resultPath

character string containing a valid system path to which the the qc plots will be written

trRef

character string with a link to a TPP-TR reference object RData file

fcStr

character string indicating how columns that will contain the actual fold change values are called.

idVar

character string indicating name of the columns containing the unique protein identifiers

qualColName

character string indicating which column contain protein identification quality measures

Value

A pdf with various quality control plots for a specified 2D-TPP data set


DoroChilds/TPP documentation built on Oct. 31, 2021, 4:38 a.m.