tpp2dCreateReport: Create Report of 2D-TPP analysis
In DoroChilds/TPP: Analyze thermal proteome profiling (TPP) experiments

Creates a markdown pdf file that summarizes the 2D-TPP analysis by reporting e.g. R version and package versions used

tpp2dCreateReport(
  data = NULL,
  configFile = NULL,
  resultPath = NULL,
  documentType = "html_document",
  configTable = NULL,
  normalize = TRUE,
  methods = c(""),
  idVar = "gene_name",
  fcStr = "rel_fc_",
  fcStrUpdated = "norm_rel_fc_",
  intensityStr = "signal_sum_",
  addCol = NULL,
  fcTolerance = NA,
  r2Cutoff = NA,
  fcCutoff = NA,
  slopeBounds = c(NA, NA),
  fTest = FALSE,
  trRef = "none"
)

`data`	output data frame from an 2D-TPP analysis
`configFile`	character string containing a valid system path to a file which summarizes the experimental details of the 2D-TPP experiment or respective data frame
`resultPath`	character string containing a system path to where the report should be written
`documentType`	character string indicating which document type the report should have default: "html_document", alternatives: "pdf_document"
`configTable`	data frame summarizing the experimental details of the 2D-TPP experiment
`normalize`	boolean flag indicating whether median normalization has been performed
`methods`	vector of characters which indicate which methods have been used
`idVar`	unique protein identifier prefix
`fcStr`	fold change identifier prefix
`fcStrUpdated`	character string matching the fold change columns after normalization has been performed
`intensityStr`	intensity values prefix
`addCol`	vector of strings indicating which additional data columns were imported
`fcTolerance`	tolerance for the fcCutoff parameter
`r2Cutoff`	Quality criterion on dose response curve fit.
`fcCutoff`	Cutoff for highest compound concentration fold change
`slopeBounds`	Bounds on the slope parameter for dose response curve fitting
`fTest`	boolean variable stating whether an fTest was performed
`trRef`	character string containing a valid system path to a previously generated TPP-TR reference object