Description Usage Arguments Details Value See Also Examples
View source: R/tpp2dMerge2dRef.R
Merges 2D-TPP result data with TPP-TR reference data to generate a big table including both results
1 2 3 4 5 6 7 8 | tpp2dMerge2dRef(
resultTable_2D,
referenceDataSummary,
refIDVar = "Protein_ID",
idVar = NULL,
data = NULL,
trRef = NULL
)
|
resultTable_2D |
dataframe containing the 2D-TPP results |
referenceDataSummary |
summarized reference data results. See details. |
refIDVar |
character string indicating name of the columns containing the unique protein identifiers in the reference data set |
idVar |
DEPRECATED |
data |
DEPRECATED |
trRef |
DEPRECATED |
referenceSummary
contains summary statistics like median
fold changes and is produced by the function
tpp2dCreateTPPTRreference
. It summarizes the results of a
TPP-TR analysis of a reference data set.
A reference data set is the a output of a TR experiment without drug
treatment on the same cell line as resultTable_2D.
A data frame with results merged from 2D-TPP and TPP-TR reference
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
data(panobinostat_2DTPP_smallExample)
config_tpp2d <- panobinostat_2DTPP_config
data_tpp2d <- panobinostat_2DTPP_data
tpp2dResults <- analyze2DTPP(configTable = config_tpp2d,
data = data_tpp2d,
methods=c("doseResponse"),
createReport="none",
nCores=1,
idVar = "representative",
addCol = "clustername",
intensityStr = "sumionarea_protein_",
nonZeroCols = "qusm")
trRef <- file.path(system.file("data", package="TPP"),
"TPPTR_reference_results_HepG2.RData")
annotatedTable <- tpp2dMerge2dRef(resultTable_2D = tpp2dResults,
referenceDataSummary = trRef)
|
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