Description Usage Arguments Value See Also Examples
View source: R/tppccrResultTable.R
tppccrResultTable
summarizes the
outcomes of a TPP-CCR study in a results table and includes quality information
about the estimated dose response curves.
1 | tppccrResultTable(data, r2Cutoff = 0.8)
|
data |
list of expressionSet objects containing protein fold changes, as well as fitted curve parameters. |
r2Cutoff |
quality criterion on dose response curve fit. @details If |
A data frame in which the results are stored row-wise for each protein, together with the original annotation from the input files.
tppccrCurveFit
,tppccrPlotCurves
1 2 3 4 5 6 7 8 | data(hdacCCR_smallExample)
tppccrData <- tppccrImport(configTable=hdacCCR_config,
data=hdacCCR_data)
tppccrNorm <- tppccrNormalize(data=tppccrData)
tppccrTransformed <- tppccrTransform(data=tppccrNorm)
tppccrFitted <- tppccrCurveFit(data=tppccrTransformed, nCores=1)
tppccrResults <- tppccrResultTable(data=tppccrFitted)
subset(tppccrResults, passed_filter_Panobinostat_1 & passed_filter_Panobinostat_2)
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