API for EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data
| Global functions | |
|---|---|
| %>% | Man page |
| .as.peakData | Source code |
| .common_print_data | Source code |
| .filterNumericRangePlot | Source code |
| .kendrickPlotInternal | Source code |
| .plotCategoricalEmetaFilt | Source code |
| .subset.ftmsData.internal | Source code |
| .summarizeGroupComparisonsInternal | Source code |
| .summarizeGroupsInternal | Source code |
| .vanKrevelenPlotInternal | Source code |
| applyFilt | Man page Source code |
| applyFilt.confFilt | Man page Source code |
| applyFilt.emetaFilt | Man page Source code |
| applyFilt.formulaFilt | Man page Source code |
| applyFilt.massFilt | Man page Source code |
| applyFilt.moleculeFilt | Man page Source code |
| as.CoreMSData | Man page Source code |
| as.compoundData | Man page Source code |
| as.moduleData | Man page Source code |
| as.peakData | Man page Source code |
| as.reactionData | Man page Source code |
| assign_bs1 | Source code |
| assign_bs2 | Source code |
| assign_bs3 | Source code |
| assign_class | Man page Source code |
| assign_elemental_composition | Man page Source code |
| assign_mf | Man page Source code |
| atom_count_vectorizer | Source code |
| calc_aroma | Man page Source code |
| calc_dbe | Man page Source code |
| calc_element_ratios | Man page Source code |
| calc_gibbs | Man page Source code |
| calc_kendrick | Man page Source code |
| calc_nosc | Man page Source code |
| classesPlot | Man page Source code |
| combinePeaksWithSameFormula | Man page Source code |
| commonDensityCognostics | Source code |
| commonVanKrevelenCognostics | Source code |
| comparisonDensityCognostics | Source code |
| comparisonMatrix | Man page Source code |
| comparisonSummaryVanKrevelenCognostics | Source code |
| compound_calcs | Man page Source code |
| concat | Man page Source code |
| conf_filter | Man page Source code |
| conf_filter_dt | Man page Source code |
| coreMSDataToFtmsData | Man page Source code |
| densityCognostics | Man page Source code |
| densityPlot | Man page Source code |
| divideByGroup | Man page Source code |
| divideByGroupComparisons | Man page Source code |
| divideBySample | Man page Source code |
| edata_replace | Man page Source code |
| edata_transform | Man page Source code |
| emeta_filter | Man page Source code |
| examplePeakData | Man page |
| exampleProcessedPeakData | Man page |
| filter_worker | Man page Source code |
| formula_filter | Man page Source code |
| formula_writer_helper | Source code |
| ftms12T_edata | Man page |
| ftms12T_emeta | Man page |
| ftms12T_fdata | Man page |
| getAromaColName | Man page Source code |
| getBS1ColName | Man page Source code |
| getBS2ColName | Man page Source code |
| getBS3ColName | Man page Source code |
| getCarbonColName | Man page Source code |
| getCompoundColName | Man page Source code |
| getDBEAIColName | Man page Source code |
| getDBEColName | Man page Source code |
| getDBEoColName | Man page Source code |
| getDataScale | Man page Source code |
| getDatabase | Man page Source code |
| getDivisionType | Source code |
| getEDataColName | Man page Source code |
| getElCompColName | Man page Source code |
| getElementColName | Man page Source code |
| getExtractionColName | Man page Source code |
| getFDataColName | Man page Source code |
| getFactorColorPalette | Source code |
| getGibbsColName | Man page Source code |
| getGroupComparisonSummaryFunctionNames | Man page Source code |
| getGroupDF | Man page Source code |
| getGroupSummaryFunctionNames | Man page Source code |
| getHCRatioColName | Man page Source code |
| getHydrogenColName | Man page Source code |
| getInstrumentType | Man page Source code |
| getIsotopicColName | Man page Source code |
| getKendrickDefectColName | Man page Source code |
| getKendrickMassColName | Man page Source code |
| getMFColName | Man page Source code |
| getMFNameColName | Man page Source code |
| getMassColName | Man page Source code |
| getModAromaColName | Man page Source code |
| getModuleColName | Man page Source code |
| getModuleName | Man page Source code |
| getModuleNodeColName | Man page Source code |
| getNCRatioColName | Man page Source code |
| getNOSCColName | Man page Source code |
| getNPRatioColName | Man page Source code |
| getNitrogenColName | Man page Source code |
| getOCRatioColName | Man page Source code |
| getOxygenColName | Man page Source code |
| getPCRatioColName | Man page Source code |
| getPhosphorusColName | Man page Source code |
| getPrincipalCoordinates | Man page Source code |
| getRatioColName | Man page Source code |
| getReactionColName | Man page Source code |
| getSulfurColName | Man page Source code |
| getVKColName | Source code |
| getVanKrevelenCategoryBounds | Man page Source code |
| getVanKrevelenPlottingDF | Source code |
| get_curve_colors | Source code |
| get_curve_data | Source code |
| get_data_vector | Source code |
| get_hist_data | Source code |
| groupCognostics | Source code |
| group_designation | Man page Source code |
| gtest.standard | Man page Source code |
| heatmap | Man page Source code |
| kendrickCognostics | Man page Source code |
| kendrickPlot | Man page Source code |
| makePlural | Source code |
| mapCompoundsToModules | Man page Source code |
| mapCompoundsToReactions | Man page Source code |
| mapPeaksToCompounds | Man page Source code |
| mass_error_plot | Man page Source code |
| mass_filter | Man page Source code |
| metacyc_mass_filter | Source code |
| molecule_filter | Man page Source code |
| n_present | Source code |
| nice_axis_limits | Source code |
| numPeaksPlot | Man page Source code |
| one_factor_change | Man page Source code |
| panelFunctionGenerator | Man page Source code |
| parseModuleReaction | Man page Source code |
| parse_mf | Man page Source code |
| plot.CoreMSData | Man page Source code |
| plot.confFilt | Man page Source code |
| plot.emetaFilt | Man page Source code |
| plot.formulaFilt | Man page Source code |
| plot.massFilt | Man page Source code |
| plot.moleculeFilt | Man page Source code |
| plot.peakData | Man page Source code |
| plotPrincipalCoordinates | Man page Source code |
| plotlyHeatmap | Man page Source code |
| plotly_build_wrapper | Source code |
| print.compoundData | Source code |
| print.ftmsDataSummary | Source code |
| print.groupSummary | Source code |
| print.moduleData | Source code |
| print.peakData | Source code |
| print.reactionData | Source code |
| prop_present | Source code |
| read_CoreMS_data | Man page Source code |
| sampleCognostics | Source code |
| scatterPlot | Man page Source code |
| setAromaColName | Man page Source code |
| setBS1ColName | Man page Source code |
| setBS2ColName | Man page Source code |
| setBS3ColName | Man page Source code |
| setCarbonColName | Man page Source code |
| setCompoundColName | Man page Source code |
| setDBEAIColName | Man page Source code |
| setDBEColName | Man page Source code |
| setDBEValenceDF | Man page Source code |
| setDBEoColName | Man page Source code |
| setDataScale | Source code |
| setDatabase | Source code |
| setEDataColName | Man page Source code |
| setElCompColName | Man page Source code |
| setElementColName | Man page Source code |
| setExtractionColName | Man page Source code |
| setFDataColName | Man page Source code |
| setGibbsColName | Man page Source code |
| setGroupDF | Source code |
| setHCRatioColName | Man page Source code |
| setHydrogenColName | Man page Source code |
| setInstrumentType | Source code |
| setIsotopicColName | Man page Source code |
| setKendrickDefectColName | Man page Source code |
| setKendrickMassColName | Man page Source code |
| setMFColName | Man page Source code |
| setMFNameColName | Man page Source code |
| setMassColName | Man page Source code |
| setModAromaColName | Man page Source code |
| setModuleColName | Man page Source code |
| setModuleNodeColName | Man page Source code |
| setNCRatioColName | Man page Source code |
| setNOSCColName | Man page Source code |
| setNPRatioColName | Man page Source code |
| setNitrogenColName | Man page Source code |
| setOCRatioColName | Man page Source code |
| setOxygenColName | Man page Source code |
| setPCRatioColName | Man page Source code |
| setPhosphorusColName | Man page Source code |
| setRatioColName | Man page Source code |
| setReactionColName | Man page Source code |
| setSulfurColName | Man page Source code |
| skewness | Source code |
| subset.compoundData | Man page Source code |
| subset.moduleData | Man page Source code |
| subset.peakData | Man page Source code |
| subset.reactionData | Man page Source code |
| summarizeGroupComparisons | Man page Source code |
| summarizeGroups | Man page Source code |
| summary.emetaFilt | Man page Source code |
| summary.formulaFilt | Man page Source code |
| summary.ftmsData | Man page Source code |
| summary.massFilt | Man page Source code |
| summary.moleculeFilt | Man page Source code |
| transformation_counts | Man page Source code |
| unique_mf_assignment | Man page Source code |
| uniqueness_gtest | Man page Source code |
| uniqueness_nsamps | Man page Source code |
| uniqueness_prop | Man page Source code |
| vanKrevelenCognostics | Man page Source code |
| vanKrevelenPlot | Man page Source code |
| vector_replace | Man page Source code |
| vignette_interactivity_between_plots | Man page |
