API for ETHZ-INS/enrichMiR
enrichMiR: miRNA target enrichment analysis
| Global functions | |
|---|---|
| $,enrich.results-method | Man page |
| .TS2regulon | Source code |
| .addBestType | Source code |
| .agDF | Source code |
| .aggregateByFamilies | Source code |
| .applySynonyms | Source code |
| .censorScore | Source code |
| .checkSets | Source code |
| .cleanMiRname | Source code |
| .dea2binary | Source code |
| .dea2sig | Source code |
| .decideLambda | Source code |
| .dispatchTest | Source code |
| .exampleBackground | Source code |
| .exampleGeneset | Source code |
| .filterInput | Source code |
| .filterMatchSets | Source code |
| .filterTranscripts | Source code |
| .getAppIntro | Source code |
| .getBrowserCompTable | Source code |
| .getHelpModal | Source code |
| .getTargetScanSites | Source code |
| .getTargetscan_miRfamilies | Source code |
| .getTestsTable | Source code |
| .homogenizeDEA | Source code |
| .is.matrix | Source code |
| .list2DF | Source code |
| .lm.pval | Source code |
| .mergeSmallerGroups | Source code |
| .noMatchingFeatures | Source code |
| .ob | Source code |
| .plMergeList | Source code |
| .reduceBm | Source code |
| .reverselog_trans | Source code |
| .setsToScoreMatrix | Source code |
| .siteTypeColors | Source code |
| .testDescription | Source code |
| .testIntro | Source code |
| CDplot | Man page Source code |
| CDplotWrapper | Man page Source code |
| [,targetAnnotationDF,ANY,ANY,ANY-method | Man page |
| [,targetAnnotationMatrix,ANY,ANY,ANY-method | Man page |
| aggregateTests | Man page Source code |
| areamir | Man page Source code |
| as.data.frame,enrich.results-method | Man page |
| as.data.frame,targetAnnotationDF-method | Man page |
| as.data.frame,targetAnnotationMatrix-method | Man page |
| as.matrix,targetAnnotationDF-method | Man page |
| as.matrix,targetAnnotationMatrix-method | Man page |
| availableTests | Man page Source code |
| breakStrings | Man page |
| dround | Man page Source code |
| ebayes | Man page Source code |
| enrich.results | Man page |
| enrich.results-class | Man page |
| enrich.results-methods | Man page |
| enrichMiR | Man page Source code |
| enrichMiR.server | Man page Source code |
| enrichMiR.ui | Source code |
| enrichPlot | Man page Source code |
| findGO | Man page Source code |
| fisher.test.p | Man page |
| getGOgenes | Man page Source code |
| getHumanMirExp | Man page Source code |
| getMouseMirExp | Man page Source code |
| getResults | Man page Source code |
| gsea | Man page Source code |
| head,targetAnnotationDF-method | Man page |
| initialize,enrich.results-method | Man page |
| ks | Man page Source code |
| length,targetAnnotationDF-method | Man page |
| length,targetAnnotationMatrix-method | Man page |
| lmadd | Man page Source code |
| matchMirExpr | Man page Source code |
| modscore | Man page Source code |
| modsites | Man page Source code |
| mw | Man page Source code |
| names,enrich.results-method | Man page |
| names,targetAnnotationDF-method | Man page |
| names,targetAnnotationMatrix-method | Man page |
| overlap | Man page Source code |
| plMod | Man page Source code |
| recapitalizeGenes | Man page Source code |
| recapitalizeMiRs | Man page Source code |
| regmir | Man page Source code |
| regmir.bb | Man page Source code |
| regmir.bc | Man page Source code |
| regmir.cc | Man page Source code |
| setTargetFeatures,targetAnnotationDF-method | Man page |
| setTargetFeatures,targetAnnotationMatrix-method | Man page |
| show,enrich.results-method | Man page |
| show,targetAnnotation-method | Man page |
| show,targetAnnotationDF-method | Man page |
| siteoverlap | Man page Source code |
| siteoverlap.old | Man page Source code |
| summary,enrich.results-method | Man page |
| targetAnnotation | Man page Source code |
| targetAnnotationDF-class | Man page |
| targetAnnotationMatrix-class | Man page |
| testEnrichment | Man page Source code |
| woverlap | Man page Source code |
