siteoverlap: siteoverlap
In ETHZ-INS/enrichMiR: enrichMiR: miRNA target enrichment analysis
siteoverlap R Documentation
siteoverlap
Description
Applies Fisher's test to the number of binding sites among a set of features
(vs all other binding sites in that set of features).
Of note, this application violates the assumptions of Fisher's exact test.
Usage
siteoverlap(signal, sets, alternative = c("greater", "less", "two.sided"))
Arguments
signal
A named logical vector indicating which features are
differentially-expressed
sets
A data.frame with at least the following columns:
'set', 'feature', 'sites'.
alternative
Test alternative (defaults to 'greater' to test for
over-representation)
Value
a data.frame.
ETHZ-INS/enrichMiR documentation built on July 20, 2024, 12:03 a.m.
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| siteoverlap | R Documentation |
siteoverlap
Description
Applies Fisher's test to the number of binding sites among a set of features (vs all other binding sites in that set of features). Of note, this application violates the assumptions of Fisher's exact test.
Usage
siteoverlap(signal, sets, alternative = c("greater", "less", "two.sided"))
Arguments
signal |
A named logical vector indicating which features are differentially-expressed |
sets |
A data.frame with at least the following columns: 'set', 'feature', 'sites'. |
alternative |
Test alternative (defaults to 'greater' to test for over-representation) |
Value
a data.frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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