getMouseMirExp: getMouseMirExp

In ETHZ-INS/enrichMiR: enrichMiR: miRNA target enrichment analysis

getMouseMirExp

Description

Get the mouse miRNA expression in a given tissue or celltype, based on the GSE119661 dataset (Kern et al., 2020) supplemented with some celltypes from the GSE30286 dataset (He et al., 2012).

Usage

getMouseMirExp(x = NULL)

Arguments

x	Desired tissue or celltype

Value

If 'x' is NULL, returns a vector of the possible values. If 'x' is given and matches a tissue/celltype of the dataset, returns the average miRNA expression as logCPM, i.e. log(1+counts per million).

Examples

head(getMouseMirExp("Muscle"))

ETHZ-INS/enrichMiR documentation built on July 20, 2024, 12:03 a.m.