overlap: overlap
In ETHZ-INS/enrichMiR: enrichMiR: miRNA target enrichment analysis
overlap R Documentation
overlap
Description
Traditional overlap (Fisher test) between a logical signal (e.g.
differentially-expressed features) and the elements of sets.
Usage
overlap(signal, sets, alternative = c("greater", "less", "two.sided"))
Arguments
signal
A named logical vector indicating which features are
differentially-expressed
sets
A data.frame of annotation, with at least the following columns:
'set', 'feature'. Alternatively, a sparse logical matrix, with sets as
columns and features as rows (dimensions must be named).
alternative
Test alternative (defaults to 'greater' to test for
over-representation)
Value
a data.frame.
ETHZ-INS/enrichMiR documentation built on July 20, 2024, 12:03 a.m.
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| overlap | R Documentation |
overlap
Description
Traditional overlap (Fisher test) between a logical signal (e.g. differentially-expressed features) and the elements of sets.
Usage
overlap(signal, sets, alternative = c("greater", "less", "two.sided"))
Arguments
signal |
A named logical vector indicating which features are differentially-expressed |
sets |
A data.frame of annotation, with at least the following columns: 'set', 'feature'. Alternatively, a sparse logical matrix, with sets as columns and features as rows (dimensions must be named). |
alternative |
Test alternative (defaults to 'greater' to test for over-representation) |
Value
a data.frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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