regmir: regmir

In ETHZ-INS/enrichMiR: enrichMiR: miRNA target enrichment analysis

regmir

Description

miRNA enrichment analysis using regularized regression

Usage

regmir(
  signal,
  sets,
  binary = NULL,
  alpha = 1,
  do.plot = FALSE,
  use.intercept = FALSE,
  keepAll = TRUE
)

regmir.bb(signal, sets, ...)

regmir.bc(signal, sets, ...)

regmir.cc(signal, sets, ...)

Arguments

signal	A vector of logical or numeric values, with gene symbols as names.
sets	A data.frame with at least the following columns: 'set', 'feature', and (if binary=FALSE) 'score'. Alternatively, a sparse logical (if binary=TRUE) or numeric matrix with features as rows and sets as columns.
binary	Logical; whether to consider target prediction as binary.
alpha	elastic net mixing param (0=ridge, 1=lasso)
do.plot	Logical, whether to plot coefficients against lambda
use.intercept	Logical, whether to use an intercept in the model.
keepAll	Logical, whether to return all families.

Value

A DataFrame.

ETHZ-INS/enrichMiR documentation built on July 20, 2024, 12:03 a.m.