| aggregateTests | Aggregate the various tests |
| areamir | areamir |
| availableTests | availableTests |
| breakStrings | breakStrings |
| CDplot | CDplot |
| CDplotWrapper | CDplotWrapper |
| dround | dround |
| ebayes | ebayes |
| enrichMiR | enrichMiR |
| enrichMiR.server | enrichMiR.server |
| enrichPlot | enrichPlot |
| enrich.results | EnrichMiR enrichment results |
| findGO | findGO |
| fisher.test.p | fisher.test.p |
| getGOgenes | getGOgenes |
| getHumanMirExp | getHumanMirExp |
| getMouseMirExp | getMouseMirExp |
| getResults | getResults |
| gsea | gsea |
| ks | ks |
| lmadd | lmadd |
| matchMirExpr | matchMirExpr |
| mw | mw |
| overlap | overlap |
| plMod | plMod |
| recapitalizeGenes | recapitalizeGenes |
| recapitalizeMiRs | recapitalizeMiRs |
| regmir | regmir |
| siteoverlap | siteoverlap |
| siteoverlap.old | siteoverlap.old |
| targetAnnotation | targetAnnotation |
| testEnrichment | testEnrichment |
| woverlap | woverlap |
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