plotSwarmGenes: plotSwarmGenes

In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

plotSwarmGenes

Usage

plotSwarmGenes(swarm, ...)

## S4 method for signature 'CIMseqSwarm'
plotSwarmGenes(
  swarm,
  singlets,
  multiplets,
  genes,
  multipletsToPlot,
  freq = 10,
  ...
)

Arguments

swarm	CIMseqSwarm; A CIMseqSwarm object.
...	additional arguments to pass on.
singlets	CIMseqSinglets; A CIMseqSinglets object.
multiplets	CIMseqMultiplets; A CIMseqMultiplets object.
genes	Character; Genes to be plotted. Can not exceed 20.
multipletsToPlot	Character; Multiplets to be plotted.
freq	Numeric, Length 1 vector indicating the frequency the cost should be calculated along x.

Value

A ggplot object.

Author(s)

Jason T. Serviss

EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.