LDgenepop: Linkage Disequlibrium

In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data

Linkage Disequlibrium

Description

Calculate linkage disequilibrium p-values using GENEPOP.

Usage

LDgenepop(
  g,
  dememorization = 10000,
  batches = 100,
  iterations = 5000,
  delete.files = TRUE,
  label = NULL
)

Arguments

g	a gtypes object.
dememorization, batches, iterations	parameters for GENEPOP MCMC LD procedure as defined in test_LD.
delete.files	logical. Delete GENEPOP input and output files when done?
label	character string to use to label GENEPOP input and output files.

Value

data.frame of disequilibrium estimates between pairs of loci

Author(s)

Eric Archer [e-mail]

See Also

genepop

Examples

## Not run: 
data(msats.g)
msats.ld <- LDgenepop(msats.g)
head(msats.ld)

## End(Not run)

EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.