View source: R/fixedDifferences.R
fixedDifferences | R Documentation |
Summarize fixed base pair differences between strata.
fixedDifferences(
g,
count.indels = TRUE,
consec.indels.as.one = TRUE,
bases = c("a", "c", "g", "t", "-")
)
g |
a gtypes object. |
count.indels |
logical. Count indels when evaluating sites for fixed differences? |
consec.indels.as.one |
logical. If |
bases |
a character vector of valid bases to consider. |
a list with components:
list of sites with fixed differences for each pair of strata
data.frame of number of sites fixed between each pair of strata
Eric Archer <eric.archer@noaa.gov>
fixedSites
, variableSites
data(dloop.g)
fd <- fixedDifferences(dloop.g)
fd
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