hweTest: Hardy-Weinberg Equilibrium

In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data

Hardy-Weinberg Equilibrium

Description

Calculate Hardy-Weinberg equilibrium p-values.

Usage

hweTest(
  g,
  use.genepop = FALSE,
  which = c("Proba", "excess", "deficit"),
  enumeration = FALSE,
  dememorization = 10000,
  batches = 20,
  num.rep = 5000,
  delete.files = TRUE,
  label = NULL
)

Arguments

g	a gtypes object.
use.genepop	logical. Use GENEPOP to calculate HWE p-values? If FALSE then hw.test is used.
which, enumeration, dememorization, batches	parameters for GENEPOP MCMC HWE procedure as defined in test_HW.
num.rep	the number of replicates for the Monte Carlo procedure for hw.test or number of iterations for test_HW.
delete.files	logical. Delete GENEPOP files when done?
label	character string to use to label GENEPOP files.

Value

a vector of p-values for each locus.

Author(s)

Eric Archer [e-mail]

See Also

genepop, hw.test

Examples

data(msats.g)
hweTest(msats.g)

EricArcher/strataG documentation built on May 17, 2024, 12:41 p.m.