fusFs: Fu's Fs
In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data
fusFs R Documentation
Fu's Fs
Description
Calculate Fu's Fs for a set of sequences to test
for selection.
Usage
fusFs(x)
Arguments
x
set of DNA sequences or a haploid gtypes
object with sequences.
Note
Currently, this function is limited to calculating Fs for fewer than
approximately 172 sequences due to numerical overflow issues. NaN
will be returned for larger data sets. Statistical significance (p-values)
of Fs must be calculated with case-specific simulations.
Author(s)
Eric Archer eric.archer@noaa.gov
References
Fu, Y-X. 1997. Statistical tests of neutrality of mutations
against population growth, hitchiking and background selection.
Genetics 147:915-925.
Examples
data(dolph.seqs)
fusFs(dolph.seqs)
EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.
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| fusFs | R Documentation |
Fu's Fs
Description
Calculate Fu's Fs for a set of sequences to test for selection.
Usage
fusFs(x)
Arguments
x |
set of DNA sequences or a haploid gtypes object with sequences. |
Note
Currently, this function is limited to calculating Fs for fewer than
approximately 172 sequences due to numerical overflow issues. NaN
will be returned for larger data sets. Statistical significance (p-values)
of Fs must be calculated with case-specific simulations.
Author(s)
Eric Archer eric.archer@noaa.gov
References
Fu, Y-X. 1997. Statistical tests of neutrality of mutations against population growth, hitchiking and background selection. Genetics 147:915-925.
Examples
data(dolph.seqs) fusFs(dolph.seqs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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