fixedSites: Fixed Sites
In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data
fixedSites R Documentation
Fixed Sites
Description
Identify fixed sites among sequences.
Usage
fixedSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
Arguments
x
a gtypes object with sequences, a list of sequences, or a consensus sequence.
Sequences must be aligned.
bases
a character vector of valid bases to consider.
simplify
if there is a single locus, return result in a simplified
form? If FALSE a list will be returned wth one element per locus.
Value
a vector of fixed sites. Element names are site positions in the
original sequence.
Author(s)
Eric Archer <eric.archer@noaa.gov>
See Also
variableSites
Examples
data(dolph.haps)
fixedSites(dolph.haps)
EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.
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| fixedSites | R Documentation |
Fixed Sites
Description
Identify fixed sites among sequences.
Usage
fixedSites(x, bases = c("a", "c", "g", "t", "-"), simplify = TRUE)
Arguments
x |
a |
bases |
a character vector of valid bases to consider. |
simplify |
if there is a single locus, return result in a simplified
form? If |
Value
a vector of fixed sites. Element names are site positions in the original sequence.
Author(s)
Eric Archer <eric.archer@noaa.gov>
See Also
variableSites
Examples
data(dolph.haps) fixedSites(dolph.haps)
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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