gtypes2genind: Convert Between 'gtypes' And 'genind' objects.

In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data

Convert Between gtypes And genind objects.

Description

Convert a gtypes object to a genind object and vice-versa.

Usage

gtypes2genind(x, type = c("codom", "PA"))

genind2gtypes(x)

Arguments

x	either a gtypes or genind object to convert from.
type	a character string indicating the type of marker for genind objects: 'codom' stands for 'codominant' (e.g. microstallites, allozymes); 'PA' stands for 'presence/absence' markers (e.g. AFLP, RAPD).

Author(s)

Eric Archer [e-mail]

See Also

initialize.gtypes, df2gtypes, sequence2gtypes, as.data.frame.gtypes, gtypes2loci

Examples

data(msats.g)

# Convert to genind
gi <- gtypes2genind(msats.g)
gi

# Convert to gtypes
gt <- genind2gtypes(gi)
gt

EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.