Files in EvolEcolGroup/mtDNAcombine
R package to download, combine, and curate sequences from public databases
.Rbuildignore
.circleci/config.yml
.gitignore
DESCRIPTION
NAMESPACE
R/align_and_summarise.R
R/build_genbank_df.R
R/check_poss_synyms.R
R/drop_low_haplo_number.R
R/drop_low_sample_size.R
R/drop_low_sequence_length.R
R/export_details.R
R/export_sequences.R
R/gene_of_interest.R
R/get_GB_sequence_data.R
R/get_gene_details.R
R/get_sample_details.R
R/hapfreq_from_paper.R
R/identify_outlier.R
R/load_accession_list.R
R/magnify_to_sampled_freq.R
R/outliers_dropped.R
R/remove_duplicates.R
R/setup_basic_xml.R
R/standardise_gene_names.R
R/standardise_spp_names.R
R/updating_info_df.R
README.Rmd
README.md
inst/extdata/Barisas_et_al_supp_data.doc
inst/extdata/FOR_ALIGNMENT_Calidris_maritima.fasta
inst/extdata/GB_data.csv
inst/extdata/GB_with_SeqDat.csv
inst/extdata/MAGNIFY_Calidris_maritima.csv
inst/extdata/More_info_df.csv
inst/extdata/ND2_Carpodacus_erythrinus_BEASTinput.xml
inst/extdata/ND2_Carpodacus_erythrinus_TracerOut
inst/extdata/Net_Picoides_tridactylus.png
inst/extdata/change_df.csv
inst/extdata/common_rosefinch_BSP.png
inst/extdata/gene_nomenclature_correction.csv
inst/extdata/hist_Calidris_maritima.png
inst/extdata/hist_Pinicola_enucleator.png
inst/extdata/min_examp_accno.csv
inst/extdata/mtDNAcombine_flow.png
inst/extdata/poss_synyms_updated.csv
inst/extdata/vignette_accessions.csv
inst/extdata/vignette_info_df.csv
man/align_and_summarise.Rd
man/build_genbank_df.Rd
man/check_poss_synyms.Rd
man/drop_low_haplo_number.Rd
man/drop_low_sample_size.Rd
man/drop_low_sequence_length.Rd
man/export_details.Rd
man/export_sequences.Rd
man/gene_of_interest.Rd
man/get_GB_sequence_data.Rd
man/get_gene_details.Rd
man/get_sample_details.Rd
man/hapfreq_from_paper.Rd
man/identify_outlier.Rd
man/load_accession_list.Rd
man/magnify_to_sampled_freq.Rd
man/outliers_dropped.Rd
man/remove_duplicates.Rd
man/setup_basic_xml.Rd
man/standardise_gene_names.Rd
man/standardise_spp_names.Rd
man/updating_info_df.Rd
vignettes/mtDNAcombine.Rmd
vignettes/mtDNAcombine.md
