magnify_to_sampled_freq: Multiplies sequence data up to sampled frequency, aligns and...
In EvolEcolGroup/mtDNAcombine: R package to download, combine, and curate sequences from public databases
Description
Usage
Arguments
Details
View source: R/magnify_to_sampled_freq.R
Description
magnify_to_sampled_freq
Usage
1
magnify_to_sampled_freq(directory_path = getwd(), magnify_file_list)
Arguments
directory_path
path to the directory in which to build/call files,
defaults to working directory
magnify_file_list
.csv file with two columns; first column lists
accession numbers/accession versions and the second the frequency that
haplotype was found at when sampled.
Details
Function multiplies data to sampled frequency, aligns sequences, writes
aligned fasta files, plots haplotype network and extracts summary data.
Unaligned sequence files are read in and accessions (individual haplotypes)
are multiplied by given values in relevant .csv file. Also, haplotype
networks are drawn, and summary data recorded.
EvolEcolGroup/mtDNAcombine documentation built on July 8, 2021, 10:30 p.m.
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Description Usage Arguments Details
View source: R/magnify_to_sampled_freq.R
Description
magnify_to_sampled_freq
Usage
1 | magnify_to_sampled_freq(directory_path = getwd(), magnify_file_list)
|
Arguments
directory_path |
path to the directory in which to build/call files, defaults to working directory |
magnify_file_list |
.csv file with two columns; first column lists accession numbers/accession versions and the second the frequency that haplotype was found at when sampled. |
Details
Function multiplies data to sampled frequency, aligns sequences, writes aligned fasta files, plots haplotype network and extracts summary data.
Unaligned sequence files are read in and accessions (individual haplotypes) are multiplied by given values in relevant .csv file. Also, haplotype networks are drawn, and summary data recorded.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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