remove_duplicates: Removes multiple copies of one gene
In EvolEcolGroup/mtDNAcombine: R package to download, combine, and curate sequences from public databases
Description
Usage
Arguments
Details
View source: R/remove_duplicates.R
Description
remove_duplicates
Usage
1
remove_duplicates(df_to_update)
Arguments
df_to_update
data frame with a column name '$gene_name'. Expected to be
'GB_data', the result of pipeline so far.
Details
Any instances of one gene being recorded multiple times for a single accession
number are found and reduced to a unique occurance.
Due to the structure of NCBI xml tree, after standardise_gene_names has
been used, there are likely to be multiple occurances of one gene associated
with a single accession number, these need to be removed.
EvolEcolGroup/mtDNAcombine documentation built on July 8, 2021, 10:30 p.m.
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Description Usage Arguments Details
View source: R/remove_duplicates.R
Description
remove_duplicates
Usage
1 | remove_duplicates(df_to_update)
|
Arguments
df_to_update |
data frame with a column name '$gene_name'. Expected to be 'GB_data', the result of pipeline so far. |
Details
Any instances of one gene being recorded multiple times for a single accession number are found and reduced to a unique occurance.
Due to the structure of NCBI xml tree, after standardise_gene_names has
been used, there are likely to be multiple occurances of one gene associated
with a single accession number, these need to be removed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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