identify_outlier: Identifies original accession number of given haplotype index...

In EvolEcolGroup/mtDNAcombine: R package to download, combine, and curate sequences from public databases

Description

identify_outlier

Usage

identify_outlier(haplotypes, fasta_data, outlier_number)

Arguments

haplotypes	list of haplotypes created by pegas haplotype
fasta_data	fasta format sequence data as read in by read.fas
outlier_number	index number of the haplotype in network that is considered to be an outlier, index numbers are attributed by pegas haploNet

Details

Uses fasta format sequence data, associated list of haplotypes, and index number of interest to extract original accession number of outlying sample.

Function uses fasta format sequence data, associated list of haplotypes created by pegas haplotype, and a given index number of interest to extract original accession number of outlying sample.

EvolEcolGroup/mtDNAcombine documentation built on July 8, 2021, 10:30 p.m.